MmuEX6000482 @ mm10
Exon Skipping
Gene
ENSMUSG00000044393 | Dsg2
Description
desmoglein 2 [Source:MGI Symbol;Acc:MGI:1196466]
Coordinates
chr18:20592272-20596081:+
Coord C1 exon
chr18:20592272-20592499
Coord A exon
chr18:20594064-20594291
Coord C2 exon
chr18:20595960-20596081
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTCCTGTCCGGCAGGTA
3' ss Score
10.49
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
AACATCCTCAAAAAACCATCACTGGCACCATCGTTATCACTGTTGAAGACGTCAATGACAATTGTCCCGTGCTGGTGGACTCTGTACGGAGTGTCTGTGAGGATGAACCATATGTGAATGTCACTGCAGAGGATTTGGATGGGGCCCAGAACAGTGCGCCATTCAGCTTCTCCATCATTGACCAGCCTCCTGGAACGGCACAGAAGTGGAAAATAACGCACCAGGAAA
Seq A exon
GTACCAGTGTGCTGCTGCAGCAGAGCGAGCGGAAACGCGGGAGAAGTGAGATTCCCTTCCTCATTTCCGACAGCCAGGGCTTCAGCTGCCCCGAAAGGCAGGTCCTTCAGCTCACTGTATGCGAGTGTCTGAAGGGCGGTGGCTGTGTGGCTGCACAGTATGACAACTACGTCGGGTTGGGCCCTGCCGCCATCGCTCTCATGATTCTAGCACTCCTGCTCCTGCTCC
Seq C2 exon
TGGTGCCGCTCTTGCTGTTGATATGCCACTGTGGAGGGGGCGCCAAAGGCTTCACCCCCATTCCTGGGACAATAGAGATGCTGCACCCTTGGAATAATGAAGGGGCACCTCCTGAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044393-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.026 C2=0.195
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(16.0=19.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCACTGGCACCATCGTTA
R:
TCCAAGGGTGCAGCATCTCTA
Band lengths:
306-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types