GgaEX0022209 @ galGal3
Exon Skipping
Gene
ENSGALG00000015142 | F1NJD5_CHICK
Description
NA
Coordinates
chr2:109269643-109272235:+
Coord C1 exon
chr2:109269643-109269870
Coord A exon
chr2:109270887-109271117
Coord C2 exon
chr2:109272108-109272235
Length
231 bp
Sequences
Splice sites
3' ss Seq
ACCCTACCCTTCTGCCTTAGCCA
3' ss Score
5.99
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ATCTTCCTACAAAAACAGTTACTGGCACCGTTGTTATTCACATTCAAGATGAGAATGATAACTGCCCAATTATTGAGAACCCTGTACAGACTGTGTGTTCAGATGCAAGATTTGTTGATGTTACAGCTAAGGATATAGATAGTTACCCATACAGTGCTCCCTACAGCTTTTCTGTCATTGATGAGCCAAAAGGAACAGCAGAAAAGTGGATAATTGCATCCAGAAATG
Seq A exon
CCACCAGTGTGCGGTTGGTTCCCCAAAATCTGAAGGCTGGCAGTGCCACAGTCCCCCTGCTAATAAAGGATTTCCAAGGGTTCAGCTGTGCTCAGCCACAGTCCCTGCAACTGTTTGTTTGTACGTGTACTGCTGATGGCGGATGCAAAGATAGAATTATTGGCACTGGGTCAGTGGTTCTGGGACCAGCAGCGATTGCACTAATCATCTTGGCGCTTTTGTTTCTGCTGC
Seq C2 exon
TTATTCCACTATTACTGCTGTTGTGTCCATGCGGCTCAGGAGCAAAGAAGGGATTTGCTACAATACCGGACTGTAGCGAAGAGACGTTGCGTAAATGGAACAGTGAAGGAGCAGTTCCTGAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015142-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.163
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(15.6=19.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTACTGGCACCGTTGTT
R:
GCAACGTCTCTTCGCTACAGT
Band lengths:
304-535
Functional annotations
There are 0 annotated functions for this event