BtaEX6091817 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33283883-33286800:-
Coord C1 exon
chr24:33286683-33286800
Coord A exon
chr24:33285579-33285697
Coord C2 exon
chr24:33283883-33284053
Length
119 bp
Sequences
Splice sites
3' ss Seq
TATTAACGTTTCCTTCCTAGATT
3' ss Score
8.98
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTTTTCCAGGTGGCCTATGTTTTAATCAAATTTGCAAATTCTCCTCGCCCTGATCTTTGGGTCTTGGAAAGATCTGTTGACTTTGGAAGCACCTACTCACCTTGGCAATATTTTGCTC
Seq A exon
ATTCTAAAGTAGACTGTTTGGAACAGTTTGGGCAGGAAGCAAACAGGGCTATCACCCGAGATGATGATGTACTTTGTACTACGGAATATTCCCGGATTGTGCCATTGGAAAATGGTGAG
Seq C2 exon
GTTGTGGTGTCCCTGATAAATGGTCGACCAGGTGCAAAAAACTTTACTTTCTCCCACGCCCTGAGGGAATTCACCAAGGCCACAAACATCCGCCTGCGTTTTCTCCGAACCAACACCCTTCTTGGACACCTCATCTCCAAAGCGCAGAGAGATCCAACCGTCACCCGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=FE(19.5=100)
A:
PF0005512=Laminin_N=FE(19.5=100)
C2:
PF0005512=Laminin_N=FE(28.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAATTCTCCTCGCCCTG
R:
GGATCTCTCTGCGCTTTGGAG
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]