GgaEX0022055 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106290273-106293023:+
Coord C1 exon
chr2:106290273-106290390
Coord A exon
chr2:106291290-106291408
Coord C2 exon
chr2:106292853-106293023
Length
119 bp
Sequences
Splice sites
3' ss Seq
AATAACTCTGATTTGACCAGACT
3' ss Score
3.13
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTCTTCCATGTTGCCTATATTCTTATCAAGTTTGCAAATTCCCCTCGTCCAGATCTCTGGATCTTAGAAAGATCAGTGGACTTTGGAAGAACTTACACTCCCTGGCAGTATTTTGCTC
Seq A exon
ACTCCAAAGCAGATTGTTTGGAACGCTTTGGAAAGGAAGCAAATGTTCCCGTGAGGAGGGATAGCGATGTCATTTGCACTACAGAGTATTCTCGCATTGTGCCTCTTGAAAATGGGGAG
Seq C2 exon
ATTGTAGTCTCTTTGGTAAATGGCCGCCCAGGAGCAAAAAACTTCACTTATTCCCCTAGTCTTCGGGAATTCACAAAAGCAACAAACATCCGCCTTCATTTTCTCAGAACTAATACACTTCTTGGCCACTTGATATCAAAAGCTCAACGAGACCCTACTGTAACCCGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=FE(15.7=100)
A:
PF0005512=Laminin_N=FE(15.7=100)
C2:
PF0005512=Laminin_N=FE(22.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAATTCCCCTCGTCCAG
R:
CGGGTTACAGTAGGGTCTCGT
Band lengths:
254-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]