RnoEX6058101 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3760271-3762448:+
Coord C1 exon
chr18:3760271-3760388
Coord A exon
chr18:3761068-3761186
Coord C2 exon
chr18:3762278-3762448
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCCCATTATTTCCTTTCTAGATT
3' ss Score
10.21
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CTCTTCCATGTGGCTTATATCTTAATCAAGTTTGCGAACTCTCCCCGCCCTGATCTTTGGGTCCTGGAACGATCCGTAGACTTTGGAAACACCTACTCGCCCTGGCAGTATTTTGCTC
Seq A exon
ATTCTAGAGGAGATTGTCTACAACAGTTTGGGCAAGAAGCAAATATGGCTGTCACCCGGGATGACCAGGTGCTATGCGTCACAGAGTATTCTAGAATCGTACCTCTGGAAAATGGCGAG
Seq C2 exon
ATTGTTGTATCCTTGATAAATGGTCGTCCAGGTGCAAAACATTTTGCTTTCTCTGACACCCTGAGGGAGTTTACGAAGGCAACAAACATCCGCTTGCGGTTTCTGCGAACCAACACCCTCCTCGGGCATCTTATATCCAAGGCAGAGCGAGACCCCACCGTCACGCGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=FE(15.9=100)
A:
PF0005512=Laminin_N=FE(15.9=100)
C2:
PF0005512=Laminin_N=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTTGCGAACTCTCCCC
R:
GGTCTCGCTCTGCCTTGGATA
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]