MmuEX6000342 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12402035-12404145:+
Coord C1 exon
chr18:12402035-12402152
Coord A exon
chr18:12402795-12402913
Coord C2 exon
chr18:12403975-12404145
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCAATTACTTTCTTTCCTAGATT
3' ss Score
8.85
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
CTCTTCCATGTGGCTTATATCTTAATCAAATTTGCAAACTCTCCCCGCCCTGATCTTTGGATCCTGGAAAGATCTGTAGACTTTGGAAGCACCTACTCACCATGGCAGTATTTTGCTC
Seq A exon
ATTCTAGAAGAGATTGTGTAGAACAGTTTGGGCAAGAAGCAAACATGGCAATTACCCAGGACGACCAGATGCTCTGTGTCACGGAGTATTCCCGTATCGTGCCTCTGGAAAATGGCGAG
Seq C2 exon
ATTGTTGTATCCTTGATAAATGGTCGTCCAGGTGCAAAAAAGTTTGCTTTCTCTGACACTCTGAGGGAGTTTACTAAGGCAACAAACATCCGCTTGCGGTTTCTGCGAACCAACACCCTCCTCGGGCATCTTATTTCCAAGGCAGAGCGAGACCCCACTGTCACGCGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'2-12,'2-4,8-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=FE(15.5=100)
A:
PF0005512=Laminin_N=FE(15.5=100)
C2:
PF0005512=Laminin_N=FE(22.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTGCAAACTCTCCCCGCC
R:
GTCTCGCTCTGCCTTGGAAAT
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types