BtaEX6091831 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33236539-33243969:-
Coord C1 exon
chr24:33243870-33243969
Coord A exon
chr24:33240158-33240314
Coord C2 exon
chr24:33236539-33236662
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTTATTTATAAAAGGCC
3' ss Score
5.32
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTGTCAGTGTGACATCGGTGGAGCCGTCACCCCTGTGTGCAGCGGGCGCTCCGGAGTCTGCCAGTGCCGAGAGCATGTCGTGGGGAAGGCCTGCCAGCG
Seq A exon
GCCTGAAAACAACTACTATTTTCCGGATTTGCATCACATGCGGTATGAGATTGAAGACGGCACTACACCCGGTGGAAGAGCACTTCGGTTTGGGTTTGATCCTCTGGAGTTTCCAGAGTTCAGCTGGAGGGGGTACGCTCAGATGACTCCGGTACAG
Seq C2 exon
AATGAAGTAAGAATCATGTTAAATGTGGGGAAGTCAAGTCTCTCCTTGTTTCATGTTGTTCTAAGATATATGAACCCTGGAACTGAAGCAGTATCTGGTCGTATAACCATTTATCCATCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(69.6=94.1)
A:
PF0005319=Laminin_EGF=PD(28.3=24.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGTGACATCGGTGGAG
R:
CCCAGGATGGATAAATGGTTATACGA
Band lengths:
221-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]