MmuEX6000329 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12450395-12456842:+
Coord C1 exon
chr18:12450395-12450494
Coord A exon
chr18:12453720-12453876
Coord C2 exon
chr18:12456710-12456842
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTACTTGTGATTGACAAAGGCC
3' ss Score
2.7
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GGTGTCAGTGTGACATTGGTGGAGCACTCACCACCATGTGTAGTGGGCCCTCGGGAGTATGCCAGTGCAGAGAGCACGTGGAGGGGAAACAGTGCCAGAG
Seq A exon
GCCTGAAAATAACTACTACTTCCCGGATTTGCACCACATGAAGTATGAGGTCGAAGATGGCACTGGACCTAATGGAAGAAACCTGCGGTTTGGATTTGATCCCCTGGTATTCCCTGAGTTTAGCTGGAGAGGATATGCTCCAATGACCTCAGTCCAG
Seq C2 exon
AATGAAGTAAGGGTGAGATTGTCTGTGAGGCAGTCCAGCCTCTCCTTGTTCCGCATCGTTCTGAGATACATCAGTCCTGGAACGGAAGCCATATCCGGCCGAATCACTCTTTACTCATCGCAGGGAGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'22-22,'22-21,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(68.1=94.1)
A:
PF0005319=Laminin_EGF=PD(29.8=26.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGACATTGGTGGAGCACT
R:
CCGAATCTCCCTGCGATGAGT
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types