RnoEX0002309 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3806216-3812141:+
Coord C1 exon
chr18:3806216-3806315
Coord A exon
chr18:3809188-3809344
Coord C2 exon
chr18:3812009-3812141
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTACTTGTGATTAACAAAGGCC
3' ss Score
2.4
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
GGTGTCAGTGTGACATTGGCGGAGCGCTCACTACCATGTGTAGTGGGCCCTCGGGAGAATGCCAGTGCAGAGAGCACATTGAGGGGAAACAGTGCCAGAG
Seq A exon
GCCTGAAAGTAACTGCTACTTCCCGGACTTGCACCACATGAAGTATGAGGTTGAAGGTGGCACTGGACCTAACGGAAGAGACCTACGGTTTGGATTTGATCCCCTGGAATTCCCTGAGTTTAGCTGGAGAGGATATGTCCCAATGACCTCTGTGCAG
Seq C2 exon
AATGAAGTAAAGGTAAGACTGACCGTGAGGAAGTCAAGCCTCTCCTTATTCCGGATTATTCTGAGGTACATCAATCCTGGAATGGAAGAAGTATCCGGCCGTATCACTGTTTACTCATCCAGGGGGAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(71.1=94.1)
A:
PF0005319=Laminin_EGF=PD(26.7=22.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGTGACATTGGCGGAG
R:
CTGACTTCCCCCTGGATGAGT
Band lengths:
230-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]