DreEX6079180 @ danRer10
Exon Skipping
Gene
ENSDARG00000058543 | lama5
Description
laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]
Coordinates
chr23:9726572-9729224:-
Coord C1 exon
chr23:9729125-9729224
Coord A exon
chr23:9728874-9729030
Coord C2 exon
chr23:9726572-9726710
Length
157 bp
Sequences
Splice sites
3' ss Seq
GATGGGATGTGTTTGTTTAGACC
3' ss Score
4.19
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTGCCAGTGTGACATTGGAGGCTCCGTGGGGCAGGCGTGTGATGAGAGATATGGCCGCTGTCGATGCAGACCCAATGTGGAGGGACCCAAATGCAAGCA
Seq A exon
ACCCCGGCCGGATCATTACTTCCCTGACTTGCACCATATGAAGTTTGAGGTGGAGGACGGCACCACCATGGATGGCCGTCCGGTGAGGTTTGGTTACAATCCACTGGAGTTTGAGAGCTTCAGCTGGAGGGGCTATGCTCAGATGTCCCCTATACAG
Seq C2 exon
CCTCGGGTTCTGGTGGAGGTGGTGGTTGGCTCTCCAGACCTGTTTCATGTGGTCTTGCACTATGTGAACCGCGGGGGTGTGGACGTGACGGGACAGGTCTCTGTGATCGAGGATGGCAGACATGTTCTGTGTGGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058543-'23-21,'23-20,24-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(69.6=94.1)
A:
PF0005319=Laminin_EGF=PD(28.3=24.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGACATTGGAGGCTCC
R:
AGTTCCCACACAGAACATGTCT
Band lengths:
234-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]