GgaEX6023035 @ galGal4
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:8206333-8208641:-
Coord C1 exon
chr20:8208542-8208641
Coord A exon
chr20:8208147-8208303
Coord C2 exon
chr20:8206333-8206471
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTGCTCCTTCTCTTCCCCAGACC
3' ss Score
10.94
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GCTGCCGCTGCGACGTCGGCGGTTCGCTGGGGCCATCCTGCGAGGAGCGGAGCGGAGCCTGCCGCTGCCGGCAGAACACGCGTGGGCCCACCTGCACTCA
Seq A exon
ACCCGTGCGGGACCATTATTTCCCTGACCTTCACCACCTGAAGTTTGAGCTGGAGGAAGGGACCACGCCAGCCGGCCGGGCCGTGCGCTTCGGCTACAACCCGCTGGAGTTCGAGGGTTTCAGCTGGCGAGGATACGCACAGATGTCCTCCATCCAG
Seq C2 exon
CCCAAGGTAGTGGTGACTCTCAATGTGACCTCCCCCGACCTCTTCCGCCTCGTCTTCCGCTACGTCAGCCGGGGGTCCGCCATTGTTGAAGGGAGGGTCTCGGTCGTTGAGGAAGGAAAGTTTAATATTTGTGGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'21-28,'21-27,22-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(76.2=94.1)
A:
PF0005319=Laminin_EGF=PD(21.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGCTGGGGCCATCCT
R:
AGTTGCCACAAATATTAAACTTTCCT
Band lengths:
218-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]