BtaEX6065621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55409642-55410295:+
Coord C1 exon
chr13:55409642-55409741
Coord A exon
chr13:55409876-55410032
Coord C2 exon
chr13:55410157-55410295
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACTGCCCCTGCTGTGGCCAGGCC
3' ss Score
6.71
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
GCTGCCGGTGTGATGTTGGCGGAGCGCTGGGGCAGAGCTGTGAGCTGAGGACGGGTGCCTGCATGTGCCGCCCCAACACCCAGGGCTCCACCTGCAGCGA
Seq A exon
GCCTGCTCAGGACCACTATCTCCCTGACTTGCACCACCTGCGCCTGGAGCTCGAGGAGGCGGCCACGCCTGAGGGCCACGCTGTGCGCTTCGGCTTCAACCCCCTGGAGTTCGAGAACTTCAGCTGGAGGGGCTATGCACAGATGACACCCATCCAG
Seq C2 exon
CCCAGGATCGTGGCACAGCTGAACCTGACCTCCCCCGACCTCTTCCGGCTCGTCTTCCGTTACGTCAACCGCGGGCCCACGAGTGTGAGCGGGCGGGTTTCCATGCGAGACCAGGACAAGTTCACCACGTGTCCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(72.7=94.1)
A:
PF0005319=Laminin_EGF=PD(25.0=20.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGTGTGATGTTGGC
R:
TTGGGACACGTGGTGAACTTG
Band lengths:
236-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]