MmuEX6107474 @ mm10
Exon Skipping
Gene
ENSMUSG00000015647 | Lama5
Description
laminin, alpha 5 [Source:MGI Symbol;Acc:MGI:105382]
Coordinates
chr2:180195881-180196583:-
Coord C1 exon
chr2:180196484-180196583
Coord A exon
chr2:180196168-180196324
Coord C2 exon
chr2:180195881-180196019
Length
157 bp
Sequences
Splice sites
3' ss Seq
AGATACCTGTTTCATGGCAGGCC
3' ss Score
5.39
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCTGTAGGTGTGATGTTGGTGGTGCCCTGGGTCAAGGCTGTGAACCAAAGACAGGTGCCTGCAGGTGCCGCCCTAACACCCAAGGACCCACCTGTAGCGA
Seq A exon
GCCAGCGAAGGACCACTACTTGCCAGACCTGCACCACATGCGGCTGGAACTAGAGGAGGCGGCCACTCCCGAGGGCCACGCTGTACGCTTTGGCTTCAACCCCCTGGAGTTTGAGAACTTTAGCTGGAGAGGCTACGCACACATGATGGCTATCCAG
Seq C2 exon
CCCAGGATTGTGGCCAGGCTGAACGTGACCTCCCCTGACCTCTTTCGGCTGGTTTTCCGATATGTCAACCGTGGATCAACCAGCGTGAATGGGCAGATCTCTGTTCGTGAAGAGGGCAAGCTTTCCAGCTGTACCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015647-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.021
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(71.1=94.1)
A:
PF0005319=Laminin_EGF=PD(26.7=22.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTAGGTGTGATGTTGGTGG
R:
TGGTACAGCTGGAAAGCTTGC
Band lengths:
236-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types