RnoEX6020603 @ rn6
Exon Skipping
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175572646-175573348:-
Coord C1 exon
chr3:175573249-175573348
Coord A exon
chr3:175572930-175573086
Coord C2 exon
chr3:175572646-175572784
Length
157 bp
Sequences
Splice sites
3' ss Seq
AGACACCTGTGCCCTGGCAGGCC
3' ss Score
5.82
5' ss Seq
CAGGTGGAC
5' ss Score
3.09
Exon sequences
Seq C1 exon
GCTGCAGGTGTGATGTTGGAGGTGCCCTGGGTCAGGGCTGTGAACCAAAGACGGGTGCCTGCAGGTGCCGCCCTAACACCCAGGGCCCTTCCTGCAGCGA
Seq A exon
GCCAGCGAAGGACCACTACTTGCCAGACCTGCATCACATACGGCTGGAACTAGAGGAGGCGGCCACTCCCGAGGGCCATGCCGTCCGCTTTGGCTTCAACCCCCTGGAGTTTGAGAACTTCAGCTGGAGAGGCTACGCACATATGACGGCTATCCAG
Seq C2 exon
CCCAGGATCGTGGCCAGGCTGAACGTGACCTCCCCTGACCTCTTTCGGCTGGTCTTCCGATATGTTAACCGTGGATCGACCAGCGTGAATGGGCAGGTCTCTGTTCGGGAAGAGGGCAAGTTTTCCAGCTGTACCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(72.7=94.1)
A:
PF0005319=Laminin_EGF=PD(25.0=20.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGTGTGATGTTGGAGG
R:
GGTACAGCTGGAAAACTTGCC
Band lengths:
234-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]