BtaEX6092669 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr24:49991054-49993964:-
Coord C1 exon
chr24:49993899-49993964
Coord A exon
chr24:49991994-49992236
Coord C2 exon
chr24:49991054-49991154
Length
243 bp
Sequences
Splice sites
3' ss Seq
GTTGCTGGGCCGCCTCCCAGAGG
3' ss Score
3.52
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCGGACCAACCAAGCAATGACTCAGATTTGGACCAGGATGCAGATCTAGCCTACAACAGTCTGAAG
Seq A exon
AGGCAGGAGCTGGAGTCGGAGAACAAGAAGCTGAAGAATGAGCTGAACGAGCTGAGGAAAGCCGTGGCCGACCAAGCCTCGGAGCACAGCCCGGCTGCCGCCGGCACCCCCGACAGCTACAGCCTCCTGCTGAACCAGCTCCGGGTGGCCAACGAGGAGCTGGAGGTGCGCAAGGAGGAAGTTCTCATCCTGCGGACCCAGATCGTGAGCGCCGACCAGCGCCGCCTGGCGGGCAAGGGCTCG
Seq C2 exon
GAGCCAAACATCAATGCCCGAACCAGTTGGCCGAACAGCGAGAAGCACGTGGATCAGGAAGATGCCATCGAGGCCTATCACGGGGTCTGCCAGACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455-'33-48,'33-47,34-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.593 C2=0.794
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACCAACCAAGCAATGACT
R:
TCTGGCAGACCCCGTGATAG
Band lengths:
159-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]