DreEX0048716 @ danRer10
Exon Skipping
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22429646-22435787:-
Coord C1 exon
chr21:22435719-22435787
Coord A exon
chr21:22430507-22430746
Coord C2 exon
chr21:22429646-22429728
Length
240 bp
Sequences
Splice sites
3' ss Seq
AAAATGTGTTCTTTTTACAGCGG
3' ss Score
9.05
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGAAGCGAGGCCAAGAACTCAACGTCAGAGGACGATATAAACGCAGACCTGGCCTACAACAGTCTGAAG
Seq A exon
CGGCAAGAGCTCGAAACAGAGAATAAGAAGTTGAAGAATGACCTTAATGAGTTAAGGAAAGCAGTGGCCGACAGGGCCTCTGAGAACAACTCATCCAATGAGCTTCAAGATGGCTACAACCTGCTGCTCAGTCAGCTCAAAGCGGCCAATGAGGAGCTGGATGTGCGCAAGGAGGAGGTCCTGATGCTCAAGACCCAGATCGTCAACTCAACAAGACAGACAGAAAACTTAAACCACATC
Seq C2 exon
AATTCCAACGATGTGTCTGAGTGGACCGACAACAAGAGCCCTGTGAACACGGAGGACCGCGTGGATGCGCCTGCATCAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003-'32-32,'32-31,35-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.657 C2=1.000
Domain overlap (PFAM):
C1:
PF102794=Latarcin=PU(8.5=58.3)
A:
PF102794=Latarcin=FE(48.5=100)
C2:
PF102794=Latarcin=FE(16.4=100),PF131661=AAA_13=PU(17.2=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]