MmuEX0030531 @ mm10
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74720837-74723857:+
Coord C1 exon
chr18:74720837-74720902
Coord A exon
chr18:74722333-74722572
Coord C2 exon
chr18:74723757-74723857
Length
240 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTGTCTGCCTTGCAGAGA
3' ss Score
10.1
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GTAGAACAACAGAACAATGGCTTAGATGTGGACCAGGACGCAGATATAGCCTACAATAGTCTGAAG
Seq A exon
AGACAGGAGCTTGAGTCAGAGAACAAGAAGCTGAAGAATGACCTGAATGAGCTGAGGAAGGCTGTCGCTGACCAAGCCATGCAGGATAACTCCACCCACAGCTCCCCAGACAGCTACAGCCTCCTCCTGAACCAGCTCAAGCTGGCCAATGAGGAGCTCGAGGTCCGCAAAGAGGAGGTGCTGATCCTCAGGACCCAGATCATGAATGCCGACCAGCGCCGCCTGTCTGGCAAGAACATG
Seq C2 exon
GAGCCGAACATCAATGCCAGAACAAGTTGGCCCAACAGTGAGAAGCACGTGGACCAGGAAGACGCCATTGAGGCCTATCACGGGGTCTGCCAGACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-'69-54,'69-52,72-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.637 C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAACAGAACAATGGCTTAGA
R:
CTGTTTGTCTGGCAGACCCC
Band lengths:
165-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types