RnoEX6059252 @ rn6
Exon Skipping
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70692510-70695562:+
Coord C1 exon
chr18:70692510-70692575
Coord A exon
chr18:70694218-70694457
Coord C2 exon
chr18:70695462-70695562
Length
240 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTGGCTGTCTTGCAGAGA
3' ss Score
9.1
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTAGAACAACAAAACAATGGCCTAGATGTGGACCAGGATGCAGATATAGCCTACAATAGTCTGAAG
Seq A exon
AGACAAGAGCTCGAGTCAGAGAACAAGAAGCTGAAGAATGATCTGAATGAGCTGCGGAAGGCTGTAGCCGACCAAGCCATGCAGGATAACTCCACTCATAGCTCCCCCGACAGCTACAGCCTCCTACTGAACCAGCTCAAGCTGGCCAACGAGGAGCTGGAGGTCCGCAAAGAGGAGGTGCTGATCCTCAGGACCCAGATCATGAATGCTGACCAGCGCAGACTGTCCGGCAAGAACATG
Seq C2 exon
GAGCCGAACATCAATGCCAGAACAAGTTGGCCCAACAGCGAGAAGCACGTGGACCAGGAAGATGCCATTGAGGCCTATCACGGGGTCTGCCAGACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104-'52-42,'52-41,53-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.637 C2=0.794
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAACAAAACAATGGCCTAGA
R:
CTGTTTGTCTGGCAGACCCC
Band lengths:
165-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]