BtaEX6092883 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008723 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
Coordinates
chr24:58901204-58914658:-
Coord C1 exon
chr24:58914524-58914658
Coord A exon
chr24:58912092-58912244
Coord C2 exon
chr24:58901204-58901310
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGCATTTGGTTCAAACCCAGATA
3' ss Score
3.32
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATTATGATGTGTGTGCCGAGGCTCCCTGTGAACAGCAGTGCACAGACAACTTTGGCCGAGTGCTGTGTACATGTTACCCAGGATACCGCTATGACCGGGAGAGGCACCGGAGACGGGAGAAGCCGTACTGCCTGG
Seq A exon
ATATCGATGAATGCGCCACGAGCAACGAGACGCTGTGCGCGCACATCTGCGTCAACACCGTGGGCAGCTACCGCTGTGAGTGCCGGGAGGGCTACGTCCAAGAGGAAGACGGCAGGACGTGCACCAAGGAAGACAAGTACCCCAATGACACTG
Seq C2 exon
GGCACGACGACGAGAAGGTGGAGAACGCGGTCCGAGCCGCCACCTGCTGTGCCACGTGCAAGGAGTTGCACCAGGTGAAGCAGACGGTGCTGCAGCTGAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008723-'1-2,'1-1,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.192 C2=0.333
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=58.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=78.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGATGTGTGTGCCGAGGC
R:
CTTCAGCTGCAGCACCGTC
Band lengths:
235-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]