DreEX6083268 @ danRer10
Exon Skipping
Gene
ENSDARG00000086158 | ccbe1
Description
collagen and calcium binding EGF domains 1 [Source:ZFIN;Acc:ZDB-GENE-090506-7]
Coordinates
chr21:10546952-10551159:+
Coord C1 exon
chr21:10546952-10547086
Coord A exon
chr21:10547892-10548029
Coord C2 exon
chr21:10551053-10551159
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTTTTTTTTTTCAGACA
3' ss Score
10.93
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTATGATGTGTGTGCCGGCGCCCCGTGTGAACAGCAGTGTACGGATCATTTCGGTCGGGTTGTTTGCACCTGCTATGACGGGTATCGATATGACCGGGAACGACACAGAAACAGGGAGAAACCATATTGCCTGG
Seq A exon
ACATTGATGAATGTGCCAACAATAACGAGACTGTGTGCTCACAGATGTGTGTGAACACTCCCGGCAGCTACCGGTGCGACTGCCACAGCGGCTTCTACCTGGAGGATGATGGGAAGACATGCACCAAGGGCGAGAGAG
Seq C2 exon
CTCCACTCTTTGAAAAATCAGACAACGTCATGAAAGAAGGCACGTGTTCGGCCACATGCGAGGACTTCCATCAGATGAAGATGACTGTTCTCCAACTCAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086158-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.139
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(86.2=54.3)
A:
PF126622=cEGF=PD(10.3=6.4),PF146701=FXa_inhibition=WD(100=78.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATGATGTGTGTGCCGGCG
R:
CTTCTGTTTGAGTTGGAGAACAGT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]