GgaEX1013182 @ galGal4
Exon Skipping
Gene
ENSGALG00000027785 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
Coordinates
chrZ:9171904-9177396:-
Coord C1 exon
chrZ:9177262-9177396
Coord A exon
chrZ:9176396-9176533
Coord C2 exon
chrZ:9171904-9172010
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTACTCTTGCTCCTCTCCAGACA
3' ss Score
8.39
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACTACGATGTGTGTGCTGAAGCTCCTTGTGAACAGCAGTGCACAGATAACTTCGGACGGGTGCTGTGCACTTGCTATCCCGGGTACCGCTACGATCGGGAGAGGCACAGGAACAGGGAGAAGCCTTATTGCCTCG
Seq A exon
ACATTGACGAGTGTGCCGCCAGCAATGGGACGCTGTGCTCGCACATCTGCATCAACACCGTGGGCAGCTACAGGTGTGAGTGCCACGAAGGCTACACCCGGGGGGAGGACGGCAGGACGTGCACCAAGGGAGATAAAG
Seq C2 exon
CTGGACTTTCTGAGAAATCTGAAAACGTGGCGAAACCAGGGACATGCTGTGCCTCTTGTAAGGAATTTCATCAAATAAAGCAGACAGTTTTGCAACTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027785-'8-12,'8-9,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.139
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(85.7=52.2)
A:
PF126622=cEGF=PD(10.7=6.4),PF146701=FXa_inhibition=WD(100=78.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGCTGAAGCTCCTTG
R:
CAGTTGCAAAACTGTCTGCTT
Band lengths:
226-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]