RnoEX6059105 @ rn6
Exon Skipping
Gene
ENSRNOG00000024536 | AABR07032338.1
Description
NA
Coordinates
chr18:61771925-61788863:-
Coord C1 exon
chr18:61788728-61788863
Coord A exon
chr18:61787055-61787207
Coord C2 exon
chr18:61771925-61772028
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATGCATTTGGTTCAAACCAGATA
3' ss Score
4.56
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GATTATGACATTTGTGCCCAAGCTCCCTGTGAACAGCAATGCACGGATAACTTCGGCCGTGTGCTGTGCACGTGCTATCCAGGATACCGATATGACCGAGAGAGGCACCAAAAGCGGGAGAAGCCATACTGCCTGG
Seq A exon
ATATCGATGAGTGTGCCACCGGCAACACCACTCTGTGTGCACATACCTGCGTCAACACCATGGGCAGCTACCACTGTGAGTGTCGGGAGGGCTACATCCTTGAGGACGATGGGAGGACCTGCACGAGGGGAGACAAATACCCCAATGACACTG
Seq C2 exon
GGCATGAGGAGAAGTCCGAGAATGAGGTGAAAGCTGGGACCTGCTGTGCCACATGCAAGGAGTTCTCCCAGATGAAGCAGACGGTGCTGCAGCTGAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024536-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.183 C2=0.314
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(85.7=52.2)
A:
PF126622=cEGF=PD(10.7=5.8),PF146701=FXa_inhibition=WD(100=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGACATTTGTGCCCAAGCT
R:
TGCTTCAGCTGCAGCACC
Band lengths:
234-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]