BtaEX6093315 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11485174-11486184:+
Coord C1 exon
chr22:11485174-11485252
Coord A exon
chr22:11485345-11485443
Coord C2 exon
chr22:11486046-11486184
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGCCCCACTTCTGATCCCAGAAC
3' ss Score
3.89
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGTCTGCCAGAAGAGCAAGGATCTGGTGGTCCAAGAGTTGTCGACCTGCCCATTGACCCAAGACCTGCTTCAGGAGGAG
Seq A exon
AACTGCTACATCCTGGATCAGGGTGGCTTCAAGATCTACGTGTGGCAGGGACGCCGGGCCAGCCTCCAGGAGAGAGGGGCTGCCTTCAGGAGGGCTCTG
Seq C2 exon
AACTTCATCCAGGCCAAGGGCTACCCGAGCTACACCAGCGTGGAGGTGATGGACGACGGCGCCGAGTCGGCCGGGTTCAAGCAGCTCTTCCGATCGTGGTCTGGGCAGCAGCGCAAGAACAAGAACCTTAGTGGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(19.7=55.6)
A:
PF0062617=Gelsolin=FE(42.1=100)
C2:
PF0062617=Gelsolin=PD(34.2=55.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCAAGAGTTGTCGACCT
R:
GTTCTTGTTCTTGCGCTGCTG
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]