RnoEX0097997 @ rn6
Exon Skipping
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127744163-127745083:+
Coord C1 exon
chr8:127744163-127744241
Coord A exon
chr8:127744326-127744424
Coord C2 exon
chr8:127744948-127745083
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTCACAAGCTTTTTCCTAGGGC
3' ss Score
1.18
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TGTCTTCGAGAAGGGAACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTGCTGCAGGAGGAT
Seq A exon
GGCTGCTATCTCCTGGACCAGGGTGGCTTCAAGATCTACATGTGGCAGGGACGAAAGTCCAGCCCCGAGGAGAGGAAGGCTGCCTTCAGCAGGGCTGTG
Seq C2 exon
GGCTTCATCCAGGCCAAGGGTTACCCAAACTACACCAATGTGGAGGTGGTGAACGACGGCGCGGAGTCCACAGCCTTCCAGCAGCTTTTCTGGACATGGTCGAAGGAGCTAAATGGGAAAAAACACCCGAGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446-'9-14,'9-13,10-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(20.8=59.3)
A:
PF0062617=Gelsolin=FE(41.6=100)
C2:
PF0062617=Gelsolin=PD(33.8=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAAGGGAACAGACCTGG
R:
TCCAGAAAAGCTGCTGGAAGG
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]