DreEX6094735 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20287762-20288284:-
Coord C1 exon
chr24:20288206-20288284
Coord A exon
chr24:20288002-20288100
Coord C2 exon
chr24:20287762-20287915
Length
99 bp
Sequences
Splice sites
3' ss Seq
GATGTATGTCTTGTTTGCAGGAT
3' ss Score
8.93
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGTGTCAGACGCCAGTGGTCAGCTGTTGGTACAGGAAGTGGCTGTCAGTCCACTCACCCAGGATCTGCTGTGCTCCTCT
Seq A exon
GATTGCTATATTTTAGATCAAGGTGGCACCTCGATAATGGTCTGGAAGGGAAAAGGAGCTTCAAATGAAGAGAGGCGCTCGGCGATGGGCCGGGCAGTT
Seq C2 exon
GGATTTATAAAAGCAAAGAACTACCCGGCCAGCACTAAAGTGGAGGTCATGAGTGAAGGAGGAGAATCTGCTATGTTTAAACAGCTCTTCAAGTCTTGGACTGAAAAAGGTCAAACTCAAGGCCTGGGAAAGACACACTCAGTAGGAAAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909-'10-15,'10-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.121 C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(20.8=59.3)
A:
PF0062617=Gelsolin=FE(41.6=100)
C2:
PF0062617=Gelsolin=PD(33.8=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCACTCACCCAGGATCTG
R:
GTGTCTTTCCCAGGCCTTGAG
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]