GgaEX1063103 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:4509472-4512586:+
Coord C1 exon
chr2:4509472-4509550
Coord A exon
chr2:4510115-4510213
Coord C2 exon
chr2:4512433-4512586
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTATCTCTTTCTCCTCAGGAC
3' ss Score
12.28
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGTCTACGAGAAGGACAACGACCTCGTGGTACAGGAGATAGCCACTCGGCCCCTGACACAAGACCTGCTCCAGCATGAG
Seq A exon
GACTGCTACATTTTAGACCAAGGTGGCTTTAAGATTTACGTCTGGAGAGGAAAGGCCTCCAACCAGGAGGAGAAGAAAGCAGCCTTCACTCGAGCTGTG
Seq C2 exon
GGTTTTATCCAAGCCAAAGGCTATTCTCCTTCCACGAACATTGAAGTGATCAATGACGGTGCAGAGTCAGCTATGTTCAAACAGCTCTTCCAGAGGTGGATGGAAAAGGATGAAACACAGGGGCTGGGCAAAGTCTATACTATTGGCAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(20.8=59.3)
A:
PF0062617=Gelsolin=FE(41.6=100)
C2:
PF0062617=Gelsolin=PD(33.8=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACACAAGACCTGCTCCAG
R:
GTATAGACTTTGCCCAGCCCC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]