BtaEX6093375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11705839-11728405:+
Coord C1 exon
chr22:11705839-11705980
Coord A exon
chr22:11719631-11719686
Coord C2 exon
chr22:11728296-11728405
Length
56 bp
Sequences
Splice sites
3' ss Seq
GTAATTTTTTTTCCTTACAGAGA
3' ss Score
9.25
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTTCTGTTCTAGATATTATTAAGCACATTGTGGCAAAGGGGGAACATAAAAATGGGGTCCTGGATGAAGCTACCATCGCTACAATACTCAAAGAAGTGCTGGAGGGTTTGGAATACCTGCATAAAAATGGACAAATTCACAG
Seq A exon
AGATGTGAAAGCTGGCAATATTCTTCTTGGAGAAGATGGCTCGGTACAGATTGCAG
Seq C2 exon
ACTTTGGAGTTAGTGCTTTTTTAGCAACTGGTGGTGACATTACTCGGAATAAAGTGAGAAAAACCTTTGTTGGAACACCTTGCTGGATGGCGCCTGAAGTTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927-'9-10,'9-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
PF0006920=Pkinase=PD(12.2=90.0)
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTGCTGGAGGGTTTGGA
R:
CCATCCAGCAAGGTGTTCCAA
Band lengths:
141-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]