MmuEX0033372 @ mm9
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119177798-119193805:-
Coord C1 exon
chr9:119193664-119193805
Coord A exon
chr9:119182047-119182102
Coord C2 exon
chr9:119177798-119177907
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTTTCTTTGAAGAGA
3' ss Score
6.52
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTTCTGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGAGTGGAGTTCTGGACGAGCCAACCATTGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCATAAGAATGGGCAGATTCACAG
Seq A exon
AGATGTGAAAGCTGGAAACATTCTTCTAGGAGAAGACGGCTCTGTGCAGATTGCAG
Seq C2 exon
ATTTCGGCGTCAGTGCTTTTTTAGCCACTGGTGGTGACATTACCAGAAATAAAGTGAGAAAAACGTTTGTTGGCACCCCGTGCTGGATGGCACCCGAAGTTATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
PF0006920=Pkinase=FE(6.9=100)
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGACTGGAGTACCTGCA
R:
CCATAACTTCGGGTGCCATCC
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: