HsaEX6055106 @ hg38
Exon Skipping
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38198722-38221687:+
Coord C1 exon
chr3:38198722-38198863
Coord A exon
chr3:38216096-38216151
Coord C2 exon
chr3:38221578-38221687
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTTAAAGAGA
3' ss Score
7.53
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTTCTGTTCTGGATATTATTAAGCACATTGTGGCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGGGCTGGAATATCTGCATAAAAATGGACAGATCCACAG
Seq A exon
AGATGTGAAAGCTGGAAACATTCTTCTTGGAGAAGATGGCTCAGTACAGATTGCAG
Seq C2 exon
ACTTTGGGGTTAGTGCTTTTTTAGCAACTGGTGGTGATATTACCCGAAATAAAGTGAGAAAGACCTTTGTTGGCACCCCTTGTTGGATGGCACCTGAAGTTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-'22-26,'22-20,24-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
PF0006920=Pkinase=PD(12.2=90.0)
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGAAGTACTGGAAGGGC
R:
GGGGTGCCAACAAAGGTCTTT
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains