GgaEX1041644 @ galGal3
Exon Skipping
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4797947-4820423:+
Coord C1 exon
chr2:4797947-4798088
Coord A exon
chr2:4811700-4811755
Coord C2 exon
chr2:4820314-4820423
Length
56 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTTGTCTTTCTACAGGGA
3' ss Score
9.88
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTCTGTTTTGGATATTATAAAGCACATTGTGGCCAAAGGAGAACACAAGACCGGTGTCCTGGATGAGCCCTGTATAGCCACGATCCTCAAGGAGGTGCTGGAGGGGCTGGACTACCTGCATAAAAACGGACAAATCCACAG
Seq A exon
GGATGTGAAAGCAGGAAACATTCTTCTTGGAGAAGATGGCTCAGTGCAAATTGCAG
Seq C2 exon
ACTTTGGCGTTAGTGCTTTTTTGGCCACTGGTGGTGACATTACCAGAAATAAAGTCAGGAAAACATTTGTAGGCACACCTTGCTGGATGGCACCAGAAGTTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
PF0006920=Pkinase=FE(6.9=100)
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTGGATGAGCCCTGTA
R:
TCTGGTAATGTCACCACCAGTG
Band lengths:
135-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]