DreEX0052983 @ danRer10
Exon Skipping
Gene
ENSDARG00000034189 | oxsr1a
Description
oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
Coordinates
chr2:24051657-24056165:+
Coord C1 exon
chr2:24051657-24051798
Coord A exon
chr2:24051881-24051936
Coord C2 exon
chr2:24056056-24056165
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTTGTCTCTGTGTAGGGA
3' ss Score
10.04
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GCTCAGTGCTTGATTTTATTAAGTACATCATTTCCAAAGGAGAGCATAAATCGGGCGTGATGGACGAGCCCAGCATTGCCACCATACTAAGAGAGGTGCTCGAAGGTCTCGAATATCTGCACAAAAATGGCCAGATTCACAG
Seq A exon
GGATGTGAAGGCTGGAAATATTCTTTTAGGAGAGGACGGCTCTGTTCAGATTGCAG
Seq C2 exon
ACTTTGGTGTTAGTGCCTTTTTAGCGACTGGTGGAGACATGACTCGAAACAAAGTGAGGAAGACATTTGTAGGAACTCCATGCTGGATGGCTCCTGAGGTCATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034189-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
PF0006920=Pkinase=FE(6.9=100)
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATAAATCGGGCGTGATGGA
R:
TCCACCAGTCGCTAAAAAGGC
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]