Special

BtaEX6093935 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21821336-21822973:-
Coord C1 exon
chr22:21822875-21822973
Coord A exon
chr22:21821580-21821663
Coord C2 exon
chr22:21821336-21821482
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTCTTAAATTTGCTTTCCAGGTC
3' ss Score
10.57
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGGTCATAGGTGACAAGGTTGTTCTGAACCCCGTGAATGCCGGCCAGCCCTTACATGCCAGCAGCCATCAGCTGGTGGATAACCCAGGCTGCAACGAG
Seq A exon
GTCAATTCCGTCAACTGCAATACAAGCTGGAAAATAGTCCTTTTCATGAAATGGAGTGACAACAAAGATGACATATTAAAGGGG
Seq C2 exon
GGTGACGTGGTGAGGCTGTTCCATGCCGAGCAGGAGAAGTTTCTCACCTGTGACGAGCACAGGAAGAAGCAGCACGTCTTTCTGAGAACCACCGGCCGGCAGTCTGCCACGTCCGCCACCAGCTCAAAAGCCCTGTGGGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.121 A=0.000 C2=0.041
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=FE(18.3=100)
A:
PF087096=Ins145_P3_rec=PD(11.4=71.4),PF0281514=MIR=PU(2.0=14.3)
C2:
PF0281514=MIR=FE(23.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGAACCCCGTGAATGC
R:
CCGGTGGTTCTCAGAAAGACG
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]