Special

GgaEX6010812 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19072934-19073828:+
Coord C1 exon
chr12:19072934-19073032
Coord A exon
chr12:19073509-19073592
Coord C2 exon
chr12:19073682-19073828
Length
84 bp
Sequences
Splice sites
3' ss Seq
AGTTCTATTTCTCCTTTTAGGTC
3' ss Score
11.29
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTTGTCATTGGAGACAAAGTAGTCCTGAATCCTGTGAACGCTGGCCAGCCTCTTCATGCTAGTAGTCATCAGCTTGTTGATAATCCGGGATGCAATGAG
Seq A exon
GTCAACTCTGTGAATTGCAATACAAGCTGGAAAATAGTCCTTTTCATGAAATGGAGCGATAATAAAGATGACATCCTCAAAGGG
Seq C2 exon
GGGGATGTAGTAAGATTGTTTCATGCAGAGCAGGAGAAGTTTCTGACTTGTGATGAGCACAGGAAAAAGCAGCACGTCTTCCTGAGAACGACGGGGAGGCAGTCTGCCACTTCTGCAACCAGCTCAAAAGCACTGTGGGAGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.121 A=0.000 C2=0.143
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
C2:
PF0281514=MIR=FE(23.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAATCCTGTGAACGCTGG
R:
CGTCGTTCTCAGGAAGACGTG
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]