DreEX6092738 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35707974-35708947:-
Coord C1 exon
chr11:35708849-35708947
Coord A exon
chr11:35708197-35708280
Coord C2 exon
chr11:35707974-35708120
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTGTTTCTCCTCAGGTG
3' ss Score
13.73
5' ss Seq
GGGGTAGAT
5' ss Score
0.46
Exon sequences
Seq C1 exon
GTTGTGATTGGGGACAAAGTAGTTTTGAATCCGGTAAACGCAGGACAGCCTCTCCACGCCAGCAGCCATCAGCTGGTGGACAATCCTGGCTGTAATGAG
Seq A exon
GTGAACTCGGTGAACTGCAACACGAGCTGGAAGATTGTTTTATTTATGAAGTGGAGCGACAACAAGGAGGCTATTCTTAAAGGG
Seq C2 exon
GGGGACGTTGTTCGGCTGTTTCACGCGGAGCAGGAGAAGTTTCTGACCTGCGATGAGCACCGGAAGAAGCAGCACGTGTTTTTGAGAACCACCGGCCGTCAGTCCGCCACCTCTGCCACCAGCAGCAAAGCATTGTGGGAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(1.9=14.3)
C2:
PF0281514=MIR=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAGCTGGTGGACAATCC
R:
CACAATGCTTTGCTGCTGGTG
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]