Special

BtaEX6093956 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21763616-21768440:-
Coord C1 exon
chr22:21768189-21768440
Coord A exon
chr22:21766259-21766384
Coord C2 exon
chr22:21763616-21763744
Length
126 bp
Sequences
Splice sites
3' ss Seq
AATCTGTTTCTCTTTTTCAGGTT
3' ss Score
12.89
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGGTTAATTCAGGAGAGGATGTCCTCGTGTTCTACAACGACAGAGCCTCTTTCCAGACCCTGATTCAGATGATGAGGTCCGAGCGGGACCGGATGGACGAGAACAGCCCCCTCATGTACCACATCCATCTGGTGGAGCTCTTGGCCGTGTGCACAGAGGGCAAGAACGTCTACACGGAGATCAAATGCAACTCCCTGCTCCCGCTGGATGACATTGTCCGCGTGGTGACCCACGAGGACTGCATCCCCGAG
Seq A exon
GTTAAAATTGCCTACATTAACTTCCTGAATCACTGCTATGTGGACACGGAAGTGGAAATGAAGGAGATTTATACCAGCAATCACATGTGGAAATTGTTTGAGAATTTCCTCGTCGACATCTGCAGG
Seq C2 exon
GCCTGTAATAACACGAGCGACAGGAAACACGCAGACTCGATTCTGGAGAAGTACGTCACCGAAATCGTCATGAGCATCGTCACCACGTTCTTCAGTTCTCCCTTCTCAGACCAGAGTACAACTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'35-33,'35-32,36-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCTTTCCAGACCCTGA
R:
TCTCCAGAATCGAGTCTGCGT
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]