BtaEX6093956 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21763616-21768440:-
Coord C1 exon
chr22:21768189-21768440
Coord A exon
chr22:21766259-21766384
Coord C2 exon
chr22:21763616-21763744
Length
126 bp
Sequences
Splice sites
3' ss Seq
AATCTGTTTCTCTTTTTCAGGTT
3' ss Score
12.89
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGGTTAATTCAGGAGAGGATGTCCTCGTGTTCTACAACGACAGAGCCTCTTTCCAGACCCTGATTCAGATGATGAGGTCCGAGCGGGACCGGATGGACGAGAACAGCCCCCTCATGTACCACATCCATCTGGTGGAGCTCTTGGCCGTGTGCACAGAGGGCAAGAACGTCTACACGGAGATCAAATGCAACTCCCTGCTCCCGCTGGATGACATTGTCCGCGTGGTGACCCACGAGGACTGCATCCCCGAG
Seq A exon
GTTAAAATTGCCTACATTAACTTCCTGAATCACTGCTATGTGGACACGGAAGTGGAAATGAAGGAGATTTATACCAGCAATCACATGTGGAAATTGTTTGAGAATTTCCTCGTCGACATCTGCAGG
Seq C2 exon
GCCTGTAATAACACGAGCGACAGGAAACACGCAGACTCGATTCTGGAGAAGTACGTCACCGAAATCGTCATGAGCATCGTCACCACGTTCTTCAGTTCTCCCTTCTCAGACCAGAGTACAACTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'35-33,'35-32,36-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCTTTCCAGACCCTGA
R:
TCTCCAGAATCGAGTCTGCGT
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]