DreEX0040326 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35654340-35657861:-
Coord C1 exon
chr11:35657610-35657861
Coord A exon
chr11:35654790-35654915
Coord C2 exon
chr11:35654340-35654468
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTTTACATCCCATCTTAGGTC
3' ss Score
8.85
5' ss Seq
AGGGTAACG
5' ss Score
6.18
Exon sequences
Seq C1 exon
CTAGTGAACTCGGGCGAGGATGTGTTGGTGTTTTACAATGACCGGGCCTCCTTCCAGACATTGGTCCAGATGATGCGTTCGGAGCGCGACCGGATGGATGAAAACAGCCCTCTCATGTACCACATCCATCTGGTGGAGCTTCTGGCCGTCTGCACTGAGGGCAAAAACGTCTACACTGAGATCAAGTGCAACTCTTTGCTGCCGCTAGATGATATTGTTCGTGTGGTCACACACAAAGACTGCATCCCTGAG
Seq A exon
GTCAAAATAGCATACATCAACTTCCTGAACCATTGCTACGTGGACACAGAGGTGGAAATGAAGGAGATTTACACCAGCAATCACATGTGGAAGCTCTTTGAAAACTTTCTGGTCGACATATGCAGG
Seq C2 exon
GTCTGCAACAATACAAGTGACCGCAAACATGCTGACACGACACTAGAAAGCTACGTGACTGAAACCGTGATGAGTATTGTGACGACATTTTTCAGCTCCCCTTTCTCCGACCAGAGCACTAGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'35-34,'35-33,36-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGATGATGCGTTCGGAG
R:
CACGGTTTCAGTCACGTAGCT
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]