Special

GgaEX1030859 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18454958-18456712:+
Coord C1 exon
chr12:18454958-18455209
Coord A exon
chr12:18455752-18455877
Coord C2 exon
chr12:18456584-18456712
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTCCACTTTTAGGTT
3' ss Score
13
5' ss Seq
CGGGTAATG
5' ss Score
6.86
Exon sequences
Seq C1 exon
CTGGTGAATGCGGGAGAAGACGTCCTGGTGTTTTACAATGACAGAGCCTCCTTCCAGACTTTGGTGCAGATGATGAGATCAGAGAGGGATCGGATGGATGAGAACAGCCCGCTGATGTACCACATCCACTTGGTAGAACTGCTTGCTGTGTGCACAGAAGGCAAGAATGTCTACACAGAAATAAAATGCAACTCCCTCCTTCCTCTGGATGACATTGTTAGAGTAGTAACCCATGAGGATTGCATACCTGAG
Seq A exon
GTTAAAATTGCGTACATCAACTTCTTGAATCATTGCTATGTGGACACAGAAGTAGAAATGAAAGAGATTTACACCAGTAATCATATGTGGAAGCTATTTGAGAACTTCCTGGTTGACATCTGTCGG
Seq C2 exon
GCTTGCAACAACACCAGCGACAGAAAGCATGCTGACTCCATATTGGAGAAGTACGTTACAGAAATAGTGATGAGTATCGTCACCACTTTCTTCAGTTCCCCATTCTCTGATCAGAGCACTACTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-10/24=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAGCCTCCTTCCAGACT
R:
ATGCTTTCTGTCGCTGGTGTT
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]