GgaEX1030859 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18454958-18456712:+
Coord C1 exon
chr12:18454958-18455209
Coord A exon
chr12:18455752-18455877
Coord C2 exon
chr12:18456584-18456712
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTCCACTTTTAGGTT
3' ss Score
13
5' ss Seq
CGGGTAATG
5' ss Score
6.86
Exon sequences
Seq C1 exon
CTGGTGAATGCGGGAGAAGACGTCCTGGTGTTTTACAATGACAGAGCCTCCTTCCAGACTTTGGTGCAGATGATGAGATCAGAGAGGGATCGGATGGATGAGAACAGCCCGCTGATGTACCACATCCACTTGGTAGAACTGCTTGCTGTGTGCACAGAAGGCAAGAATGTCTACACAGAAATAAAATGCAACTCCCTCCTTCCTCTGGATGACATTGTTAGAGTAGTAACCCATGAGGATTGCATACCTGAG
Seq A exon
GTTAAAATTGCGTACATCAACTTCTTGAATCATTGCTATGTGGACACAGAAGTAGAAATGAAAGAGATTTACACCAGTAATCATATGTGGAAGCTATTTGAGAACTTCCTGGTTGACATCTGTCGG
Seq C2 exon
GCTTGCAACAACACCAGCGACAGAAAGCATGCTGACTCCATATTGGAGAAGTACGTTACAGAAATAGTGATGAGTATCGTCACCACTTTCTTCAGTTCCCCATTCTCTGATCAGAGCACTACTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-10/24=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAGCCTCCTTCCAGACT
R:
ATGCTTTCTGTCGCTGGTGTT
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]