BtaEX6093960 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21745608-21750788:-
Coord C1 exon
chr22:21750604-21750788
Coord A exon
chr22:21746630-21746778
Coord C2 exon
chr22:21745608-21745719
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGGCTGTGCTTCCGTTCCAGGAC
3' ss Score
9.62
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
CCAAGAGCCGGGCCATTGCCATTCCCGTGGACTTGGACAGTCAGGTCAACAACCTCTTCCTCAAGTCCCACAACCTCGTGCAGAAAACCGCCATGAACTGGCGGCTGACGGCCCGCAATGCTGCCCGCAGAGACTCTGTCCTGGCCGCTTCCAGGGACTACCGGAACATCATCGAGAGACTGCAG
Seq A exon
GACATCGTCTCGGCCCTGGAGGACCGTCTCCGGCCCCTGGTGCAGGCCGAGTTATCTGTGCTGGTGGATGTCCTCCACCGGCCCGAGCTGCTCTTCCCGGAGAACACGGACGCCAGGAGGAAGTGTGAAAGCGGGGGCTTCATCTGCAA
Seq C2 exon
GTTAATCAAACACACTAAACAGCTGCTGGAGGAGAATGAGGAGAAACTCTGCATCAAGGTCCTTCAGACCCTCAGAGAAATGATGACCAAAGACAGAGGCTATGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'39-39,'39-38,41-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.092 C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCCGTGGACTTGGACAG
R:
TTCTCTGAGGGTCTGAAGGAC
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]