RnoEX0045396 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140446367-140450553:+
Coord C1 exon
chr4:140446367-140446551
Coord A exon
chr4:140449399-140449547
Coord C2 exon
chr4:140450442-140450553
Length
149 bp
Sequences
Splice sites
3' ss Seq
AAGGCACACTTCCATTCCAGGAC
3' ss Score
6.14
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
CCAAGAGCCGGGCCATAGCCATTCCTGTTGACCTAGACAGCCAAGTCAACAACCTCTTCCTGAAGTCCCACAACATTGTGCAGAAAACAGCCATGAACTGGCGGTTATCAGCCCGCAACGCTGCTCGTAGAGACTCTGTCCTGGCAGCTTCCAGAGACTACCGAAATATTATTGAGAGGTTACAG
Seq A exon
GACATCGTGTCTGCCCTGGAGGACCGACTCAGGCCCCTGGTCCAGGCCGAGCTGTCTGTGCTCGTGGATGTTCTACACAGACCGGAACTGCTTTTCCCTGAGAACACGGATGCCAGGAGGAAATGCGAAAGTGGAGGTTTCATCTGCAA
Seq C2 exon
GCTCATAAAACACACCAAGCAGCTGCTAGAGGAGAATGAAGAGAAACTGTGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'56-56,'56-55,59-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTTGACCTAGACAGCCA
R:
TGGTCATCATTTCCCTGAGGGT
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]