GgaEX1030863 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19104515-19106969:+
Coord C1 exon
chr12:19104515-19104699
Coord A exon
chr12:19105800-19105948
Coord C2 exon
chr12:19106858-19106969
Length
149 bp
Sequences
Splice sites
3' ss Seq
AACATCTCGATGTGTTCTAGGAC
3' ss Score
8.18
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CAAAAAGCCGAGCAATTGCAATTCCTGTGGACTTGGACAGTCAGGTCAACAACCTCTTCCTGAAATCTCACAATATTGTGCAGAAGACTGCGATGAACTGGAGAATGACTGCAAGGAATGCTGCCCGCAGGGATTCGGTGCTTGCTGCCTCCAGGGATTATCGAAACATAATTGAAAGATTACAG
Seq A exon
GACATTGTATCAGCTTTAGAGGATCGTTTACGTCCTCTTGTCCAAGCAGAGTTGTCAGTACTGGTAGATGTGCTTCACAGACCCGAACTGCTCTTCCCGGAGAACACAGATGCAAGGAGGAAATGCGAAAGCGGGGGTTTCATTTGCAA
Seq C2 exon
ATTAATAAAGCATACTAAACAGCTGCTAGAGGAGAATGAAGAGAAACTATGTATTAAAGTATTACAGACACTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'43-43,'43-42,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTCCTGTGGACTTGGACA
R:
TGGTCATCATTTCCCTGAGTGT
Band lengths:
257-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]