BtaEX6093972 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21644990-21649023:-
Coord C1 exon
chr22:21648884-21649023
Coord A exon
chr22:21648120-21648285
Coord C2 exon
chr22:21644990-21645150
Length
166 bp
Sequences
Splice sites
3' ss Seq
CCCCCACTCCTCTTTTCCAGGAG
3' ss Score
11.14
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AGCTGGTCCCTGCAGAAGAGACAGAGCAAGATAAAGAGCACACGTGCGAGACGCTGCTGATGTGCATCGTCACGGTGCTGAGTCACGGGCTGCGGAGCGGGGGCGGAGTGGGCGATGTGCTCAGGAAGCCATCCAAAGAG
Seq A exon
GAGCCCCTCTTTGCTGCTCGAGTGATCTATGACCTCTTGTTCTTCTTCATGGTCATCATCATTGTCCTTAATCTGATTTTTGGGGTCATCATTGACACCTTTGCCGACCTGAGGAGTGAAAAACAGAAAAAAGAGGAGATATTAAAGACCACGTGCTTTATCTGCG
Seq C2 exon
GGTTGGAAAGAGACAAGTTTGACAACAAGACCGTCACATTTGAAGAGCACATCAAGGAAGAACACAACATGTGGCATTACCTGTGCTTCATCGTCCTGGTGAAAGTGAAGGACTCCACGGAGTACACAGGGCCCGAAAGTTACGTGGCAGAGATGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'70-71,'70-70,72-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.9=100)
A:
PF0052026=Ion_trans=PD(11.3=51.8)
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCTGCAGAAGAGACAGA
R:
CCTTCACTTTCACCAGGACGA
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]