GgaEX0012016 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19162526-19165072:+
Coord C1 exon
chr12:19162526-19162665
Coord A exon
chr12:19164031-19164196
Coord C2 exon
chr12:19164912-19165072
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTAAAATACGTATCTTGCAGGAA
3' ss Score
7.85
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AACTGATTGCTGAAGAAATGGAGGAAGAGAATAAAGAGCATACGTGTGAGACGTTACTGATGTGCATTGTTACTGTACTGAGTCATGGGCTCAGGAGTGGGGGTGGAGTAGGTGATGTGCTCAGGAAACCATCCAAAGAG
Seq A exon
GAACCTCTCTTTGCTGCTAGAGTGATATATGATCTGTTATTCTTCTTCATGGTCATCATTATTGTCCTTAACCTGATTTTTGGTGTGATCATTGATACTTTTGCTGATTTAAGGAGTGAAAAACAGAAGAAAGAAGAGATTTTAAAAACAACTTGCTTTATTTGTG
Seq C2 exon
GTTTGGAAAGAGATAAGTTTGATAACAAGACAGTCACCTTTGAAGAGCACATTAAAGAAGAGCACAACATGTGGCATTATTTGTGCTTTATCGTGTTAGTGAAAGTAAAAGATTCAACAGAATATACAGGACCAGAAAGTTACGTGGCAGAAATGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX2-2/4=1-3
Average complexity
S*
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.8=100)
A:
PF0052026=Ion_trans=PD(11.2=51.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACGTTACTGATGTGCA
R:
TGCCACGTAACTTTCTGGTCC
Band lengths:
245-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]