DreEX6092771 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35538978-35547930:-
Coord C1 exon
chr11:35547785-35547930
Coord A exon
chr11:35545252-35545417
Coord C2 exon
chr11:35538978-35539138
Length
166 bp
Sequences
Splice sites
3' ss Seq
TATCGTCTCTTCCTCCGCAGGAG
3' ss Score
12.06
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CTGTAGGAGTTCAGTCGTCTGCATTGGTGATTGAGGATAAAGAGAGGACCTGCGACTCTCTGCTTATGTGTATCGTCACTGTGTTGAGCCACGGCCTGCGAAGCGGTGGAGGAGTCGGAGATGTGCTGCGAAAACCCTCCAAAGAG
Seq A exon
GAGCCTCTGTTTGCGGCTCGCGTCATCTACGATCTGCTCTTCTTCTTCATGGTCATCATCATCGTCCTCAACCTCATCTTTGGGGTCATTATCGATACCTTCGCAGACCTCAGAAGCGAAAAGCAGAAGAAAGAGGAGGTTCTGAAAACCACCTGCTTTATTTGTG
Seq C2 exon
GTTTGGAGAGGGACAAGTTTGACAACAAAACGGTGACGTTTGAGGAACACATTAAGGTGGAGCACAACATGTGGCACTATCTCTTCTTCATTGTGCTGGTGAAAGTCAAAGACTCCACTGAATTCACTGGGCCTGAGAGTTATGTGGCTGAAATGATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'68-67,'68-66,69-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(19.0=100)
A:
PF0052026=Ion_trans=PD(11.5=51.8),PF041569=IncA=PU(28.2=85.7)
C2:
PF041569=IncA=FE(31.2=100),PF040489=Sec8_exocyst=PU(15.6=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGGACCTGCGACTCTC
R:
CAGCCACATAACTCTCAGGCC
Band lengths:
257-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]