BtaEX6094419 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44361573-44363696:+
Coord C1 exon
chr22:44361573-44361710
Coord A exon
chr22:44362990-44363223
Coord C2 exon
chr22:44363508-44363696
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTGCTTTGTTTCAGCTA
3' ss Score
10.25
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCTTGGGAGAAGTTGCTGTTTGGAGTTTGCTTTTTTCATGCCCTTGTGCAGGAGCGAAAGAAATTTGGTCCTCTTGGGTGGAATATTCCATATGGATTTAATGAATCCGACTTACGCATCAGTATTCGACAACTACAG
Seq A exon
CTATTTATCAATGAATATGATACAATTCCATTTGAAGCGATCTCTTACCTGACTGGGGAGTGTAACTACGGAGGAAGAGTGACAGATGACTGGGACAGACGTCTCCTCTTAACCATGCTGGCTGACTTTTATAACCCACACATAATCGAAAACTCTCATTATAAGTTTTCTCCTAGCGGAAACTATTTTGCCCCTCCCAAAGGCACTTATAATGAATACATTGAATTCATTAAG
Seq C2 exon
AAACTTCCTTTTACTCAACACCCTGAGATATTTGGATTACATGAAAATGTTGATATCTCCAAAGATCTTCAACAAACGAAAGTCCTCTTTGAGTCATTGCTCCTCACCCAAGGAGGCTCCAAACAAACAGGATCCTCAGGAAGCACTGACCAGATTCTACTAGAAATTACCAAAGATATTCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'73-77,'73-76,74-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
PF0302810=Dynein_heavy=FE(10.8=100)
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGGAGAAGTTGCTGTTTG
R:
TCTGGTCAGTGCTTCCTGAGG
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]