GgaEX6010307 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8643382-8645152:-
Coord C1 exon
chr12:8645015-8645152
Coord A exon
chr12:8643997-8644230
Coord C2 exon
chr12:8643382-8643570
Length
234 bp
Sequences
Splice sites
3' ss Seq
AAGTCTCTCTTCTGTTTCAGTTA
3' ss Score
8.83
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTATGGGAGAAACTACTCTTTGGAGTCTGTTTTTTTCATGCTCTTGTTCAGGAGAGAAGAAAATTTGGGCCCCTTGGTTGGAATATACCCTATGGGTTTAATGAATCAGACTTGCGAATTAGTATCAGACAACTGCAG
Seq A exon
TTATTCATAAATGAATATCAGCATGTTCCATTTGAAGCAGTATCTTACCTGACTGGTGAGTGCAATTATGGAGGTCGAGTGACAGATGACTGGGACAGACGTTTACTGCTGACAGTGCTGGATGACTTTTATAATCCTGAAATAATTGAAAATCCTCATTACACTTTCTCTCCCAGTGGAAACTATTATGCTCCTCCAAAAGGCACGTACGAGGACTACATTGAATTTATTAAG
Seq C2 exon
AGTCTTCCCTTTAGTCAGCACCCAGAGGTATTTGGTTTGCATGAAAATGTGGATATTTCAAAAGATCTTCAGCAAACTAAGATCCTCTTTGAATCTCTGCTTTTAACACAAGGAGGAGACATTCAGGGAACTTCTTCTGGAGGTGGTGACAGCACTCTTTATGAAATTGCAGATGACATTCTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'76-82,'76-81,77-82=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
PF0302810=Dynein_heavy=FE(10.8=100)
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGAAACTACTCTTTGGAG
R:
AAAGAGTGCTGTCACCACCTC
Band lengths:
295-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]