MmuEX6040082 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26875210-26878089:+
Coord C1 exon
chr14:26875210-26875347
Coord A exon
chr14:26876769-26877002
Coord C2 exon
chr14:26877901-26878089
Length
234 bp
Sequences
Splice sites
3' ss Seq
CACTTTTATCTTTGCTTCAGTTG
3' ss Score
7.72
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCGTGGGAGAAGTTGCTTTTTGGAGTTTGCTTTTTTCATGCCCTTGTTCAAGAGAGAAAGAAATTTGGTCCCCTGGGTTGGAATATTCCGTATGGATTTAATGAGTCTGACCTACGCATCAGTGTCCGGCAGCTACAG
Seq A exon
TTGTTCATAAACGAATATGACACAATCCCATTCGAAGCTATCTCCTACCTGACTGGGGAGTGTAACTACGGAGGAAGAGTGACAGATGACTGGGACAGGCGCCTCCTGTTGACCATGCTAGCTGACTTTTACAACTCATTCATCATTGAAAACCCTCACTACAAGTTCTCGCCCAGTGGAAACTATTATGCGCCTCCCAAAGGCACTTATGATGACTACATTGAATTTATTAAG
Seq C2 exon
AAACTTCCGTTTACTCAAGAGCCTGAAATATTCGGATTACACGAAAATGTTGACATCTCCAAAGATCTTCAACAAACGAAAGTCCTTTTTGAGTCCTTGCTCCTAACCCAGGGTGGCGCCAAACAGACAGGCTCCTCAGGAAGCACTGACCAGGTCCTGTTAGAAATTACTGAAGATATCCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'60-80,'60-71,70-80=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
PF0302810=Dynein_heavy=FE(10.8=100)
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGGGAGAAGTTGCTTTTT
R:
TAACAGGACCTGGTCAGTGCT
Band lengths:
300-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types