DreEX0027451 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19584231-19588579:-
Coord C1 exon
chr23:19588442-19588579
Coord A exon
chr23:19586426-19586659
Coord C2 exon
chr23:19584231-19584419
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTCTTTGTTCCTCAGCTC
3' ss Score
8.59
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
Exon sequences
Seq C1 exon
GTCTGGGAGAAGCTCCTGTATGGGGTTTGTTTCTTTCATGCCCTTGTGCAGGAGAGGAAAAAGTTTGGGCCATTGGGATGGAACATTCCATATGGGTTTAACGAGTCAGACCTACGCATTAGTATTAGACAATTGCAG
Seq A exon
CTCTTTGTGAATGAGTACCAGGAAGTTCCCTTTGAGGCCATCACATATCTCACAGGAGAGTGTAACTATGGAGGACGTGTAACAGATGACTGGGACCGTCGCCTCCTCATGACGATCCTCGCTGACTTCTACAACAAAGACGTTATTGACCACCCACGCTACTCCTTCTCCCCTAGTGGCAAATATCACGCACCTCCAAAGTCCATCTACGAAGACTATGTAGAGTTTATCAAG
Seq C2 exon
AAACTCCCATTTACCCAGCATCCCGAGGTGTTTGGCATGCATGAGAACGTGGACATCTCCAAAGACCTTCAACAGACAAAACTCCTGTTCGATTCCCTCCTTCTGACGCAAGGTGGAGGCTCAAAGGGCGGAGGAGGCTCTGGCGGAGACAGCACCCTTCTGGACATTGCTAATGACATCCTTTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'70-70,'70-69,72-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.063
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.6=100)
A:
PF0302810=Dynein_heavy=FE(11.3=100)
C2:
PF0302810=Dynein_heavy=FE(9.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCTCCTGTATGGGGT
R:
ATGTCCAGAAGGGTGCTGTCT
Band lengths:
300-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]