BtaEX6094440 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44293056-44297724:+
Coord C1 exon
chr22:44293056-44293194
Coord A exon
chr22:44294398-44294564
Coord C2 exon
chr22:44297469-44297724
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACACTTTCTTTATGTTTTAGAAC
3' ss Score
10.78
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCCACTACTTTTTGTGGGTCCAACGGGTACAGGAAAATCAGTGTATGTGAAGGATAAGCTGATGAATCACTTGGAAAAGGACCTGTACTTTCCTTTTTATGTTAATTTCTCTGCACGGACCAGTGCCAACCAGGTTCAG
Seq A exon
AACATTATTATGGCTAGACTGGATAAAAGACGCAAAGGAGTTTTTGGACCACCTATGGGAAAGAAGTGTATAATTTTTATAGATGACATGAATATGCCTGCATTGGAGAAATATGGAGCTCAACCTCCTATTGAATTATTACGACAATTTTTTGACTGTGGGAATTG
Seq C2 exon
GTATGACCTGAAGGACACAAGTAAAATCGCATTGGTTGACATACAGCTGATTGCTGCCATGGGCCCTCCAGGTGGTGGAAGAAATCCAGTTACTCCCCGTTTTATTCGGCATTTCAACATCTGCACCATTAATACTTTCAGTGATGAAACTATGGTCCGAATCTTCTCATCAATTGTAGCATTCTACCTTAGGACTCATGACTTTCCTCCTGAATACTTTTTAGTTGGGAACCAGATTGTCAGTGGGACTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'37-36,'37-35,38-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.0=100)
A:
PF127752=AAA_7=FE(20.3=100)
C2:
PF127752=AAA_7=FE(31.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTGGGTCCAACGGGTAC
R:
GGTGCAGATGTTGAAATGCCG
Band lengths:
257-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]