MmuEX6040100 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27613132-27626010:+
Coord C1 exon
chr14:27613132-27613270
Coord A exon
chr14:27614595-27614761
Coord C2 exon
chr14:27625755-27626010
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTTAAATTTTTAGAAC
3' ss Score
9.74
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCCGCTGCTTTTTGTGGGTCCGACTGGTACAGGAAAGTCAGTGTATGTGAAGGATAAGCTAATGAATCACTTGGAAAAGGAAAAGTACTTTCCTTTCTATGTTAATTTCTCTGCACGGACCAGTGCCAATCAGGTTCAG
Seq A exon
AACATCATTATGGCTAGATTGGACAAAAGGCGCAAGGGAGTATTTGGACCACCTATGGGAAAGAAGTGTGTAATATTTATAGATGATATGAATATGCCTTCATTGGAGAAATATGGAGCACAGCCCCCTATTGAGTTATTACGACAGTTTTTTGACTGTGGACATTG
Seq C2 exon
GTATGACCTTAAGGACACCAGTAAAATCACACTGATTGATATAGAGCTGATAGCTGCCATGGGTCCTCCAGGTGGCGGAAGGAATGCTGTCACCCCCCGTTTTATTCGACATTTCAACATCTGCACTATCAATACTTTCAGTGACGAAACCATGGTCCGAATTTTCTCATCAATCATGGCGTTCTACCTTAGGACTCACGCTTTTTCTCCAGAGTACTTTGTACTCGGAAACCAAATAGTCAGCGGGACGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'39-40,'39-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(16.8=100)
A:
PF127752=AAA_7=FE(20.1=100)
C2:
PF127752=AAA_7=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCTCTGCACGGACCAGTG
R:
TGGAGAAAAAGCGTGAGTCCT
Band lengths:
246-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: