HsaEX6056788 @ hg19
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein, axonemal, heavy chain 12 [Source:HGNC Symbol;Acc:2943]
Coordinates
chr3:57394007-57401291:-
Coord C1 exon
chr3:57401153-57401291
Coord A exon
chr3:57399473-57399639
Coord C2 exon
chr3:57394007-57394262
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCCTTCATATTTTAGAAC
3' ss Score
9.98
5' ss Seq
TTGGTAACT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GCCACTCCTTTTTGTGGGTCCAACGGGTACAGGAAAATCTGTGTATGTGAAGGATAAGCTAATGAATCACTTGGAAAAGGACCAGTACTTTCCTTTTTATATTAACTTATCTGCACGGACCAGCGCCAATCAGGTTCAG
Seq A exon
AACATTATCATGGCTAGATTGGATAAAAGACGCAAAGGAGTCTTTGGACCACCTATGGGAAAGAAGTGTATAATTTTTATAGATGATATGAATATGCCTGCATTGGAGAAGTATGGAGCTCAACCACCTATTGAATTATTACGACAGTTTTTTGACTGTGGACATTG
Seq C2 exon
GTACGACCTTAAGGACACAAGTAAAATCACGCTGGTGGACATAGAGCTGATTGCTGCAATGGGCCCTCCAGGTGGTGGAAGAAATCCAGTTACTCCCCGTTGTATTCGACATTTCAACATCTGCAGTATTAATTCTTTTAGTGATGAAACTATGGTCCGAATCTTCTCATCTATTGTAGCATTCTACCTTAGAACTCATGAATTTCCTCCAGAGTACTTTGTAATTGGGAACCAGATAGTCAATGGGACTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-'42-43,'42-42,43-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(16.8=100)
A:
PF127752=AAA_7=FE(20.1=100)
C2:
PF127752=AAA_7=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTTTGTGGGTCCAACGG
R:
ATGTCGAATACAACGGGGAGT
Band lengths:
246-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)